UMCD - USC Multimodal Connectivity Database

Id:	228
Study Name:	ADHD200_CC200
Network Name:	NYU_1000804
Atlas:	Craddock 200
Region Names Full File:	file
Region Names Abbrev File:	file
Region Xyz Centers File:	file
Connectivity Matrix File:	file
Imaging Modality:	fMRI
Share:	Public
Scanner Device:	Siemens Allegra 3T
Scan Parameters:	Duration=6:00, TR=2000ms, TE=15ms, Voxel Size=3x3x4mm
Age Range Min:	7.29
Age Range Max:	7.29
Gender:	Male
Subject Pool:	Typically Developing
Group Size:	1
Preprocessing Notes:	Resting state fMRI data were preprocessed using the Athena pipeline. Remove first 4 EPI volumes (AFNI:3dcalc) Slice timing correction (AFNI:3dTshift) Deoblique dataset (AFNI:3drefit) Reorient into RPI orientation (AFNI:3dresample) Motion correct EPI volumes to the first (originally 5th) image of the time series (AFNI:3dvolreg) Mask the dataset to exclude non-brain (AFNI:3dAutomask) Average the volumes to create a mean image (AFNI:3dTstat) Co-register mean EPI image to corresponding anatomic image (FSL:flirt) Write fMRI data and mean image into template space at 4 mm x 4 mm x 4 mm resolution (FSL:applywarp). Down-sample WM and CSF masks (from anatomical preprocessing) to match EPI resolution (AFNI:3dfractionize) Extract WM and CSF time-courses from EPI volumes using WM and CSF masks (AFNI:3dmaskave) Regress out WM, CSF, motion time courses (calculated from motion correction) as well as a low order polynomial (detrending) from EPI data (AFNI:3dDeconvolve). Band-pass filter (0.009 < f < 0.08 Hz) voxel timecourses to exclude frequencies not implicated in resting state functional connectivity (AFNI:3dFourier). Blur the filtered and unfiltered data using a 6-mm FWHM Gaussian filter (AFNI:3dmerge). Further details on the pipeline are available here: http://www.nitrc.org/plugins/mwiki/index.php/neurobureau:AthenaPipeline. Functional ROIs obtained using the method described in Craddock et al. 2011, requesting <= 200 unique ROIs. http://www.ncbi.nlm.nih.gov/pubmed/21769991
Funding Source:	Data comes from the ADHD-200 sample: http://fcon_1000.projects.nitrc.org/indi/adhd200/. Funding: NIMH (R01MH083246) Autism Speaks The Stavros Niarchos Foundation The Leon Levy Foundation An endowment provided by Phyllis Green and Randolph Cowen
Mr Field Strength:
Mr Tr:
Mr Te:
Mr Voxel Size:
Mr Field Of View:
Fmri Motion Correction:
Fmri Skull Stripping:
Fmri Temporal Filtering:
Fmri Spatial Smoothing:
Fmri Slice Timing Correction:
Fmri Intensity Normalization:
Fmri Epi Unwarping:
Fmri Csf Signal Regression:
Fmri White Matter Signal Regression:
Fmri Global Signal Regression:
Dwmri Num Directions:
Dwmri Max B Value:
Dwmri Eddy Correction:
Dwmri Skull Stripping:
Dwmri Deterministic Tractography:
Dwmri Probabilistic Tractography:
Smri Skull Stripping:
Smri Intensity Normalization:

Number of times analyzed:	5
Last time analyzed:	2014-01-22 13:57
Number of times downloaded:	5470
Last time downloaded:	2020-04-02 06:59
Shared by:	jbrown81 [AT] gmail [DOT] com